Wallnoefer, Oscar; Formaggioni, Alessandro; Plazzi, Federico; Passamonti, Marco, Convergent evolution in nuclear and mitochondrial OXPHOS subunits underlies the phylogenetic discordance in deep lineages of Squamata, «MOLECULAR PHYLOGENETICS AND EVOLUTION», 2025, 208, Article number: 108358, pp. 1 - 11 [articolo]
Muneretto G.; Plazzi F.; Passamonti M., Mitochondrion-to-nucleus communication mediated by RNA export: A survey of potential mechanisms and players across eukaryotes, «BIOLOGY LETTERS», 2024, 20, Article number: 20240147, pp. 1 - 8 [articolo]Open Access
Marturano, Giovanni; Carli, Diego; Cucini, Claudio; Carapelli, Antonio; Plazzi, Federico; Frati1, Francesco; Passamonti, Marco; Nardi, Francesco, SmithHunter: a workflow for the identification of candidate smithRNAs and their targets., «BMC BIOINFORMATICS», 2024, 25, Article number: 286, pp. 1 - 24 [articolo]Open Access
Formaggioni A.; Cavalli G.; Hamada M.; Sakamoto T.; Plazzi F.; Passamonti M., The Evolution and Characterization of the RNA Interference Pathways in Lophotrochozoa, «GENOME BIOLOGY AND EVOLUTION», 2024, 16, Article number: evae098, pp. 1 - 18 [articolo]Open Access
Plazzi F.; Le Cras Y.; Formaggioni A.; Passamonti M., Mitochondrially mediated RNA interference, a retrograde signaling system affecting nuclear gene expression, «HEREDITY», 2023, 2023, pp. 1 - 6 [articolo]Open Access
Santovito, Diletta; Brustenga, Leonardo; Lucentini, Livia; Plazzi, Federico; Chiesa, Stefania; Passamonti, Marco, Negative Evidence for Sex-Linked Heteroplasmy in the Nemertean Worm Notospermus geniculatus (Delle Chiaje, 1822), «SUSTAINABILITY», 2023, 15, Article number: 10212, pp. 1 - 10 [articolo]Open Access
Formaggioni, A.; Plazzi, F.; Passamonti, M, Mito-nuclear coevolution and phylogenetic artifacts: the case of bivalve mollusks, «SCIENTIFIC REPORTS», 2022, 12, Article number: 11040, pp. 1 - 15 [articolo]Open Access
Xu, Ran; Martelossi, Jacopo; Smits, Morgan; Iannello, Mariangela; Peruzza, Luca; Babbucci, Massimiliano; Milan, Massimo; Dunham, Joseph P; Breton, Sophie; Milani, Liliana; Nuzhdin, Sergey V; Bargelloni, Luca; Passamonti, Marco; Ghiselli, Fabrizio, Multi-tissue RNA-Seq Analysis and Long-read-based Genome Assembly Reveal Complex Sex-specific Gene Regulation and Molecular Evolution in the Manila Clam, «GENOME BIOLOGY AND EVOLUTION», 2022, 14, Article number: evac171, pp. 1 - 16 [articolo]Open Access
Federico Plazzi, Guglielmo Puccio, Marco Passamonti, HERMES: an Improved Method to Test Mitochondrial Genome Molecular Synapomorphies among Clades., «MITOCHONDRION», 2021, 58, pp. 285 - 295 [articolo]Open Access
Passamonti, Marco; Calderone, Marco; Delpero, Manuel; Plazzi, Federico, Clues of in vivo nuclear gene regulation by mitochondrial short non-coding RNAs., «SCIENTIFIC REPORTS», 2020, 10, Article number: 8219, pp. 1 - 12 [articolo]Open Access
Passamonti, Marco; Plazzi, Federico, Doubly Uniparental Inheritance and beyond: The contribution of the Manila clam Ruditapes philippinarum., «JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH», 2020, 58, pp. 529 - 540 [articolo]Open Access
Plazzi F., Passamonti M., Footprints of unconventional mitochondrial inheritance in bivalve phylogeny: Signatures of positive selection on clades with doubly uniparental inheritance., «JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH», 2019, 57, pp. 258 - 271 [articolo]Open Access
Ghiselli F.; Maurizii M.G.; Reunov A.; Arino-Bassols H.; Cifaldi C.; Pecci A.; Alexandrova Y.; Bettini S.; Passamonti M.; Franceschini V.; Milani L., Natural Heteroplasmy and Mitochondrial Inheritance in Bivalve Molluscs, «INTEGRATIVE AND COMPARATIVE BIOLOGY», 2019, 59, pp. 1016 - 1032 [articolo]Open Access
Iannello, Mariangela; Puccio, Guglielmo; Piccinini, Giovanni; Passamonti, Marco; Ghiselli, Fabrizio, The dynamics of mito-nuclear coevolution: A perspective from bivalve species with two different mechanisms of mitochondrial inheritance, «JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH», 2019, 00, pp. 1 - 14 [articolo]
Ghiselli, F; Iannello, M; Puccio, G; Chang, P L; Plazzi, F; Nuzhdin, S V; Passamonti, M, Comparative transcriptomics in two bivalve species offers different perspectives on the evolution of sex-biased genes, «GENOME BIOLOGY AND EVOLUTION», 2018, 10, pp. 1389 - 1402 [articolo]Open Access
