Schlierf M.; Yew Z.T.; Rief M.; Paci E., Complex unfolding kinetics of single-domain proteins in the presence of force, «BIOPHYSICAL JOURNAL», 2010, 99, pp. 1620 - 1627 [articolo]
Yew Z.T.; Schlierf M.; Rief M.; Paci E., Direct evidence of the multidimensionality of the free-energy landscapes of proteins revealed by mechanical probes, «PHYSICAL REVIEW E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS», 2010, 81, Article number: 031923, pp. 1 - 10 [articolo]
Taniguchi Y.; Khatri B.S.; Brockwell D.J.; Paci E.; Kawakami M., Dynamics of the coiled-coil unfolding transition of myosin rod probed by dissipation force spectrum, «BIOPHYSICAL JOURNAL», 2010, 99, pp. 257 - 262 [articolo]
Khatri B.; Yew Z.T.; Krivov S.; McLeish T.; Paci E., Fluctuation power spectra reveal dynamical heterogeneity of peptides, «THE JOURNAL OF CHEMICAL PHYSICS», 2010, 133, Article number: 015101, pp. 015101 - 015110 [articolo]
Serquera D.; Lee W.; Settanni G.; Marszalek P.E.; Paci E.; Ltzhaki L.S., Mechanical unfolding of an ankyrin repeat protein, «BIOPHYSICAL JOURNAL», 2010, 98, pp. 1294 - 1301 [articolo]
Allen L.R.; Paci E., Simulation of fluorescence resonance energy transfer experiments: Effect of the dyes on protein folding, «JOURNAL OF PHYSICS. CONDENSED MATTER», 2010, 22, Article number: 235103, pp. 235103 - 235113 [articolo]
Mann R.J.; Nasr N.E.; Sinfield J.K.; Paci E.; Donnelly D., The major determinant of exendin-4/glucagon-like peptide 1 differential affinity at the rat glucagon-like peptide 1 receptor N-terminal domain is a hydrogen bond from SER-32 of exendin-4: RESEARCH PAPER, «BRITISH JOURNAL OF PHARMACOLOGY», 2010, 160, pp. 1973 - 1984 [articolo]
Allen L.R.; Krivov S.V.; Paci E., Analysis of the free-energy surface of proteins from reversible folding simulations, «PLOS COMPUTATIONAL BIOLOGY», 2009, 5, Article number: e1000428, pp. 1 - 10 [articolo]
Glowacki D.R.; Paci E.; Shalashilin D.V., Boxed molecular dynamics: A simple and general technique for accelerating rare event kinetics and mapping free energy in large molecular systems, «JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL», 2009, 113, pp. 16603 - 16611 [articolo]
Brooks B.R.; Brooks III C.L.; Mackerell Jr. A.D.; Nilsson L.; Petrella R.J.; Roux B.; Won Y.; Archontis G.; Bartels C.; Boresch S.; Caflisch A.; Caves L.; Cui Q.; Dinner A.R.; Feig M.; Fischer S.; Gao J.; Hodoscek M.; Im W.; Kuczera K.; Lazaridis T.; Ma J.; Ovchinnikov V.; Paci E.; Pastor R.W.; Post C.B.; Pu J.Z.; Schaefer M.; Tidor B.; Venable R.M.; Woodcock H.L.; Wu X.; Yang W.; York D.M.; Karplus M., CHARMM: The biomolecular simulation program, «JOURNAL OF COMPUTATIONAL CHEMISTRY», 2009, 30, pp. 1545 - 1614 [articolo]
Noronha M.; Santos R.; Paci E.; Santos H.; Macanita A.L., Fluorescence Lifetimes of Tyrosine Residues in Cytochrome c″ as Local Probes to Study Protein Unfolding, «JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL», 2009, 113, pp. 4466 - 4474 [articolo]
Forman J.R.; Yew Z.T.; Qamar S.; Sandford R.N.; Paci E.; Clarke J., Non-Native Interactions Are Critical for Mechanical Strength in PKD Domains, «STRUCTURE», 2009, 17, pp. 1582 - 1590 [articolo]
Allen L.R.; Paci E., Orientational averaging of dye molecules attached to proteins in Förster resonance energy transfer measurements: Insights from a simulation study, «THE JOURNAL OF CHEMICAL PHYSICS», 2009, 131, Article number: 065101, pp. 065101 - 065111 [articolo]
Periole X.; Allen L.R.; Tamiola K.; Mark A.E.; Paci E., Probing the free energy landscape of the FBP28 WW domain using multiple techniques, «JOURNAL OF COMPUTATIONAL CHEMISTRY», 2009, 30, pp. 1059 - 1068 [articolo]
Rose R.J.; Welsh T.S.; Waksman G.; Ashcroft A.E.; Radford S.E.; Paci E., Donor-Strand Exchange in Chaperone-Assisted Pilus Assembly Revealed in Atomic Detail by Molecular Dynamics, «JOURNAL OF MOLECULAR BIOLOGY», 2008, 375, pp. 908 - 919 [articolo]
