Casadio R., THE STATE OF THE ART OF PROTEIN-PROTEIN INTERACTION NETWORKS
The role of the "in silico" approach
BOLOGNA WINTER SCHOOL 2004 (8-14/02/2004)
Bologna - Italy, 2004. [Exhibition]
Martelli P.L.; Fariselli P.; Casadio R., An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins, «BIOINFORMATICS», 2003, 19, pp. 205 - 211 [Scientific article]
Casadio R.; Fariselli P.; Finocchiaro G.; Martelli P.L., Fishing new proteins in the twilight zone of genomes: The test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria, «PROTEIN SCIENCE», 2003, 12, pp. 1158 - 1168 [Scientific article]
Martelli P.L.; Fariselli P.; Tasco G.; Casadio R., The prediction of membrane protein structure and genome structural annotation, «COMPARATIVE AND FUNCTIONAL GENOMICS», 2003, 4, pp. 406 - 409 [Scientific article]
Occhipinti E.; Martelli P.L.; Spinozzi F.; Corsi F.; Formantici C.; Molteni L.; Amenitsch H.; Mariani P.; Tortora P.; Casadio R., 3D structure of Sulfolobus solfataricus carboxypeptidase developed by molecular modeling is confirmed by site-directed mutagenesis and small angle x-ray scattering, «BIOPHYSICAL JOURNAL», 2003, 85, pp. 1165 - 1175 [Scientific article]
Casadio R.; Martelli P.L.; Giordano A.; Rossi M.; Raia C.A., A low-resolution 3D model of the tetrameric alcohol dehydrogenase from Sulfolobus solfataricus, «PROTEIN ENGINEERING», 2002, 15, pp. 215 - 223 [Scientific article]
Martelli, P. L.; Fariselli, P.; Krogh, A.; Casadio, R., A sequence-profile-based HMM for predicting and discriminating barrel membrane proteins, «BIOINFORMATICS», 2002, 18, pp. 46 - 53 [Scientific article]
Bismuto E.; Martelli P.L.; De Maio A.; Mita D.G.; Irace G.; Casadio R., Effect of molecular confinement on internal enzyme dynamics: Frequency domain fluorometry and molecular dynamics simulation studies, «BIOPOLYMERS», 2002, 67, pp. 85 - 95 [Scientific article]
Casadio R.; Compiani M.; Facchiano A.; Fariselli P.; Martelli P.; Jacoboni I.; Rossi I., Protein structure prediction and biomolecular recognition: From protein sequence to peptidomimetic design with the human beta3 integrin, «SAR AND QSAR IN ENVIRONMENTAL RESEARCH», 2002, 13, pp. 473 - 486 [Scientific article]
Menotti, L.; Casadio, R.; Bertucci, C.; Lopez, M.; Campadelli-Fiume, G., Substitution in the murine nectin1 receptor of a single conserved amino acid at a position distal from the herpes simplex virus gD binding site confers high-affinity binding to gD, «JOURNAL OF VIROLOGY», 2002, 76, pp. 5463 - 5471 [Scientific article]
El-Masry M.M.; De Maio A.; Martelli P.L.; Casadio R.; Moustafa A.B.; Rossi S.; Mita D.G., Influence of the immobilization process on the activity of β-galactosidase bound to Nylon membranes grafted with glycidyl methacrylate. Part 1. Isothermal behavior, «JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC», 2001, 16, pp. 175 - 189 [Scientific article]
Jacoboni I.; Martelli P.L.; Fariselli P.; De Pinto V.; Casadio R., Prediction of the transmembrane regions of β-barrel membrane proteins with a neural network-based predictor, «PROTEIN SCIENCE», 2001, 10, pp. 779 - 787 [Scientific article]
Musiani, F.; Arnofi, E.; Casadio, R.; Ciurli, S., Structure-based computational study of the catalytic and inhibition mechanisms of urease, «JBIC», 2001, 6, pp. 300 - 314 [Scientific article]
El-Sherif H.; Martelli P.L.; Casadio R.; Portaccio M.; Bencivenga U.; Mita D.G., Urease immobilisation on chemically grafted nylon membranes: Part 1: Isothermal characterisation, «JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC», 2001, 14, pp. 15 - 29 [Scientific article]
Casadio R.; Compiani M.; Fariselli P.; Jacoboni I.; Martelli P.L., Neural networks predict protein folding and structure: Artificial intelligence faces biomolecular complexity, «SAR AND QSAR IN ENVIRONMENTAL RESEARCH», 2000, 11, pp. 149 - 182 [Scientific article]
