Masetti, Matteo; Bernetti, Mattia; Cavalli, Andrea, Enhanced Molecular Dynamics Simulations of Intrinsically Disordered Proteins, in: Intrinsically Disordered Proteins, New York, NY, Humana, 2020, pp. 391 - 411 (METHODS IN MOLECULAR BIOLOGY) [capitolo di libro]
Evenseth, Linn S M; Ocello, Riccardo; Gabrielsen, Mari; Masetti, Matteo; Recanatini, Maurizio; Sylte, Ingebrigt; Cavalli, Andrea, Exploring Conformational Dynamics of the Extracellular Venus flytrap Domain of the GABAB Receptor: A Path-Metadynamics Study, «JOURNAL OF CHEMICAL INFORMATION AND MODELING», 2020, 60, pp. 2294 - 2303 [articolo]Open Access
Masetti, Matteo; Falchi, Federico; Gioia, Dario; Recanatini, Maurizio; Ciurli, Stefano; Musiani, Francesco, Targeting the Protein Tunnels of the Urease Accessory Complex: A Theoretical Investigation, «MOLECULES», 2020, 25, Article number: 2911, pp. 1 - 21 [articolo]Open Access
Bernetti M.; Masetti M.; Recanatini M.; Amaro R.E.; Cavalli A., An Integrated Markov State Model and Path Metadynamics Approach to Characterize Drug Binding Processes, «JOURNAL OF CHEMICAL THEORY AND COMPUTATION», 2019, 15, pp. 5689 - 5702 [articolo]
Bernetti M.; Masetti M.; Rocchia W.; Cavalli A., Kinetics of Drug Binding and Residence Time, «ANNUAL REVIEW OF PHYSICAL CHEMISTRY», 2019, 70, pp. 143 - 171 [articolo]
Schuetz, Doris A.; Bernetti, Mattia; Bertazzo, Martina; Musil, Djordje; Eggenweiler, Hans-Michael; Recanatini, Maurizio; Masetti, Matteo*; Ecker, Gerhard F.; Cavalli, Andrea, Predicting Residence Time and Drug Unbinding Pathway through Scaled Molecular Dynamics, «JOURNAL OF CHEMICAL INFORMATION AND MODELING», 2019, 59, pp. 535 - 549 [articolo]
Massimiliano Bonomi, Giovanni Bussi, Carlo Camilloni, Gareth A. Tribello, Pavel Banáš, Alessandro Barducci, Mattia Bernetti, Peter G. Bolhuis, Sandro Bottaro, Davide Branduardi, Riccardo Capelli, Paolo Carloni, Michele Ceriotti, Andrea Cesari, Haochuan Chen, Wei Chen, Francesco Colizzi, Sandip De, Marco De La Pierre, Davide Donadio, Viktor Drobot, Bernd Ensing, Andrew L. Ferguson, Marta Filizola, James S. Fraser, Haohao Fu, Piero Gasparotto, Francesco Luigi Gervasio, Federico Giberti, Alejandro Gil-Ley, Toni Giorgino, Gabriella T. Heller, Glen M. Hocky, Marcella Iannuzzi, Michele Invernizzi, Kim E. Jelfs, Alexander Jussupow, Evgeny Kirilin, Alessandro Laio, Vittorio Limongelli, Kresten Lindorff-Larsen, Thomas Löhr, Fabrizio Marinelli, Layla Martin-Samos, Matteo Masetti, Ralf Meyer, Angelos Michaelides, Carla Molteni, Tetsuya Morishita, Marco Nava, Cristina Paissoni, Elena Papaleo, Michele Parrinello, Jim Pfaendtner, Pablo Piaggi, GiovanniMaria Piccini, Adriana Pietropaolo, Fabio Pi, Promoting transparency and reproducibility in enhanced molecular simulations, «NATURE METHODS», 2019, 16, pp. 670 - 673 [articolo]
Bernetti, Mattia; Rosini, Elena; Mollica, Luca; Masetti, Matteo; Pollegioni, Loredano; Recanatini, Maurizio; Cavalli, Andrea, Binding Residence Time through Scaled Molecular Dynamics: A Prospective Application to hDAAO Inhibitors, «JOURNAL OF CHEMICAL INFORMATION AND MODELING», 2018, 58, pp. 2255 - 2265 [articolo]
Bertazzo, Martina; Bernetti, Mattia; Recanatini, Maurizio; Masetti, Matteo; Cavalli, Andrea, Fully Flexible Docking via Reaction-Coordinate-Independent Molecular Dynamics Simulations, «JOURNAL OF CHEMICAL INFORMATION AND MODELING», 2018, 58, pp. 490-500 - 500 [articolo]
Morla-Folch, Judit; Gisbert-Quilis, Patricia; Masetti, Matteo; Garcia-Rico, Eduardo; Alvarez-Puebla, Ramon A.; Guerrini, Luca, Conformational SERS Classification of K-Ras Point Mutations for Cancer Diagnostics, «ANGEWANDTE CHEMIE. INTERNATIONAL EDITION», 2017, 56, pp. 2381 - 2385 [articolo]
Masetti, Matteo; Musiani, Francesco; Bernetti, Mattia; Falchi, Federico; Cavalli, Andrea; Ciurli, Stefano; Recanatini, Maurizio, Development of a multisite model for Ni(II) ion in solution from thermodynamic and kinetic data, «JOURNAL OF COMPUTATIONAL CHEMISTRY», 2017, 38, pp. 1834 - 1843 [articolo]
Gioia, Dario; Bertazzo, Martina; Recanatini, Maurizio; Masetti, Matteo; Cavalli, Andrea, Dynamic Docking: A Paradigm Shift in Computational Drug Discovery, «MOLECULES», 2017, 22, pp. 2029 - 2029 [articolo]Open Access
Musiani, Francesco; Gioia, Dario; Masetti, Matteo; Falchi, Federico; Cavalli, Andrea; Recanatini, Maurizio; Ciurli, Stefano, Protein Tunnels: The Case of Urease Accessory Proteins, «JOURNAL OF CHEMICAL THEORY AND COMPUTATION», 2017, 13, pp. 2322 - 2331 [articolo]Open Access
Bernetti, Mattia; Masetti, Matteo; Pietrucci, Fabio; Blackledge, Martin; Jensen, Malene Ringkjobing; Recanatini, Maurizio; Mollica, Luca; Cavalli, Andrea, Structural and Kinetic Characterization of the Intrinsically Disordered Protein SeV NTAIL through Enhanced Sampling Simulations, «JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL», 2017, 121, pp. 9572 - 9582 [articolo]
Patricia Gisbert-Quilis; Matteo Masetti; Judit Morla-Folch; Jamie M. Fitzgerald; Nicolas Pazos-Perez; Eduardo Garcia-Rico; Vincenzo Giannini; Ramon A. Alvarez-Puebla; Luca Guerrini, The Structure of Short and Genomic DNA at the Interparticle Junctions of Cationic Nanoparticles, «ADVANCED MATERIALS INTERFACES», 2017, 4, pp. 1700724 - 1700724 [articolo]
