Yew Z.T.; Krivov S.; Paci E., Free-energy landscapes of proteins in the presence and absence of force, «JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL», 2008, 112, pp. 16902 - 16907 [Scientific article]
Caflisch A.; Paci E., Molecular Dynamics Simulations to Study Protein Folding and Unfolding, in: Protein Folding Handbook., Weinheim, WILEY-VCH Verlag GmbH & Co, 2008, pp. 1143 - 1169 [Chapter or essay]
Yew Z.T.; McLeish T.; Paci E., New dynamical window onto the landscape for forced protein unfolding, «PHYSICAL REVIEW LETTERS», 2008, 101, Article number: 248104 , pp. 1 - 4 [Scientific article]
Best R.B.; Paci E.; Hummer G.; Dudko O.K., Pulling direction as a reaction coordinate for the mechanical unfolding of single molecules, «JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL», 2008, 112, pp. 5968 - 5976 [Scientific article]
Feige M.J.; Paci E., Rate of Loop Formation in Peptides: A Simulation Study, «JOURNAL OF MOLECULAR BIOLOGY», 2008, 382, pp. 556 - 565 [Scientific article]
Verger D.; Rose R.J.; Paci E.; Costakes G.; Daviter T.; Hultgren S.; Remaut H.; Ashcroft A.E.; Radford S.E.; Waksman G., Structural Determinants of Polymerization Reactivity of the P pilus Adaptor Subunit PapF, «STRUCTURE», 2008, 16, pp. 1724 - 1731 [Scientific article]
Feige M.J.; Groscurth S.; Marcinowski M.; Zu T.Y.; Truffault V.; Paci E.; Kessler H.; Buchner J., The structure of a folding intermediate provides insight into differences in immunoglobulin amyloidogenicity, «PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA», 2008, 105, pp. 13373 - 13378 [Scientific article]
Rose R.J.; Verger D.; Daviter T.; Remaut H.; Paci E.; Waksman G.; Ashcroft A.E.; Radford S.E., Unraveling the molecular basis of subunit specificity in P pilus assembly by mass spectrometry, «PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA», 2008, 105, pp. 12873 - 12878 [Scientific article]
Morton V.L.; Friel C.T.; Allen L.R.; Paci E.; Radford S.E., The Effect of Increasing the Stability of Non-native Interactions on the Folding Landscape of the Bacterial Immunity Protein Im9, «JOURNAL OF MOLECULAR BIOLOGY», 2007, 371, pp. 554 - 568 [Scientific article]
Noronha M.; Lima J.C.; Paci E.; Santos H.; Macanita A.L., Tracking local conformational changes of ribonuclease A using picosecond time-resolved fluorescence of the six tyrosine residues, «BIOPHYSICAL JOURNAL», 2007, 92, pp. 4401 - 4414 [Scientific article]
Allen L.R.; Paci E., Transition states for protein folding using molecular dynamics and experimental restraints, «JOURNAL OF PHYSICS. CONDENSED MATTER», 2007, 19, Article number: 285211 , pp. 1 - 15 [Scientific article]
Gsponer J.; Hopearuoho H.; Whittaker S.B.-M.; Spence G.R.; Moore G.R.; Paci E.; Radford S.E.; Vendruscolo M., Determination of an ensemble of structures representing the intermediate state of the bacterial immunity protein Im7, «PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA», 2006, 103, pp. 99 - 104 [Scientific article]
West D.K.; Olmsted P.D.; Paci E., Free energy for protein folding from nonequilibrium simulations using the Jarzynski equality, «THE JOURNAL OF CHEMICAL PHYSICS», 2006, 125, Article number: 204910 , pp. 1 - 8 [Scientific article]
West D.K.; Paci E.; Olmsted P.D., Internal protein dynamics shifts the distance to the mechanical transition state, «PHYSICAL REVIEW E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS», 2006, 74, Article number: 061912 , pp. 1 - 5 [Scientific article]
West D.K.; Brockwell D.J.; Olmsted P.D.; Radford S.E.; Paci E., Mechanical resistance of proteins explained using simple molecular models, «BIOPHYSICAL JOURNAL», 2006, 90, pp. 287 - 297 [Scientific article]
