Bertolini, Elisa; Babbi, Giulia; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita, MultifacetedProtDB: a database of human proteins with multiple functions, «NUCLEIC ACIDS RESEARCH», 2024, 52, pp. 494 - 501 [articolo]Open Access
Daniel Scicchitano, Giulia Babbi, Giorgia Palladino, Silvia Turroni, Yitagele Terefe Mekonnen, Cédric Laczny, Paul Wilmes, Pimlapas Leekitcharoenphon, Andrea Castagnetti, Federica D'Amico, Patrizia Brigidi, Castrense Savojardo, Gerardo Manfreda, Pierluigi Martelli, Alessandra De Cesare, Frank Møller Aarestrup, Marco Candela, Simone Rampelli, Routes of dispersion of antibiotic resistance genes from the poultry farm system, «SCIENCE OF THE TOTAL ENVIRONMENT», 2024, 912, Article number: 169086, pp. 1 - 12 [articolo]Open Access
Vazzana, Gabriele; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita, Testing the Capability of Embedding-Based Alignments on the GST Superfamily Classification: The Role of Protein Length, «MOLECULES», 2024, 29, Article number: 4616, pp. 1 - 12 [articolo]
Madeo G.; Savojardo C.; Manfredi M.; Martelli P.L.; Casadio R., CoCoNat: a novel method based on deep learning for coiled-coil prediction, «BIOINFORMATICS», 2023, 39, Article number: btad495, pp. 1 - 8 [articolo]Open Access
Nicolini F.; Martelossi J.; Forni G.; Savojardo C.; Mantovani B.; Luchetti A., Comparative genomics of Hox and ParaHox genes among major lineages of Branchiopoda with emphasis on tadpole shrimps, «FRONTIERS IN ECOLOGY AND EVOLUTION», 2023, 11, Article number: 1046960, pp. 1 - 10 [articolo]Open Access
Schweke, H.; Xu, Q.; Tauriello, G.; Pantolini, L.; Schwede, T.; Cazals, F.; Lheritier, A.; Fernandez-Recio, J.; Rodriguez-Lumbreras, L. A.; Schueler-Furman, O.; Varga, J. K.; Jimenez-Garcia, B.; Reau, M. F.; Bonvin, A. M. J. J.; Savojardo, C.; Martelli, P. L.; Casadio, R.; Tubiana, J.; Wolfson, H. J.; Oliva, R.; Barradas-Bautista, D.; Ricciardelli, T.; Cavallo, L.; Venclovas, C.; Olechnovic, K.; Guerois, R.; Andreani, J.; Martin, J.; Wang, X.; Terashi, G.; Sarkar, D.; Christoffer, C.; Aderinwale, T.; Verburgt, J.; Kihara, D.; Marchand, A.; Correia, B. E.; Duan, R.; Qiu, L.; Xu, X.; Zhang, S.; Zou, X.; Dey, S.; Dunbrack, R. L.; Levy, E. D.; Wodak, S. J., Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study, «PROTEOMICS», 2023, 23, Article number: e2200323, pp. 1 - 21 [articolo]
Savojardo C.; Martelli P.L.; Casadio R., Finding functional motifs in protein sequences with deep learning and natural language models, «CURRENT OPINION IN STRUCTURAL BIOLOGY», 2023, 81, Article number: 102641, pp. 1 - 12 [articolo]Open Access
Manfredi M.; Savojardo C.; Martelli P.L.; Casadio R., ISPRED-SEQ: Deep Neural Networks and Embeddings for Predicting Interaction Sites in Protein Sequences, «JOURNAL OF MOLECULAR BIOLOGY», 2023, 435, Article number: 167963, pp. 167963 - 167971 [articolo]Open Access
Licata L.; Via A.; Turina P.; Babbi G.; Benevenuta S.; Carta C.; Casadio R.; Cicconardi A.; Facchiano A.; Fariselli P.; Giordano D.; Isidori F.; Marabotti A.; Martelli P.L.; Pascarella S.; Pinelli M.; Pippucci T.; Russo R.; Savojardo C.; Scafuri B.; Valeriani L.; Capriotti E., Resources and tools for rare disease variant interpretation, «FRONTIERS IN MOLECULAR BIOSCIENCES», 2023, 10, Article number: 1169109, pp. 1 - 18 [articolo]Open Access
Martelossi J.; Forni G.; Iannello M.; Savojardo C.; Martelli P.L.; Casadio R.; Mantovani B.; Luchetti A.; Rota-Stabelli O., Wood feeding and social living: Draft genome of the subterranean termite Reticulitermes lucifugus (Blattodea; Termitoidae), «INSECT MOLECULAR BIOLOGY», 2023, 23, pp. 118 - 131 [articolo]
Savojardo C.; Babbi G.; Baldazzi D.; Martelli P.L.; Casadio R., A glance into mthfr deficiency at a molecular level, «INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES», 2022, 23, Article number: 167, pp. 1 - 9 [articolo]Open Access
Rosignoli, Serena; Cosenza, Francesco; Moscou, Matthew J; Civolani, Laura; Musiani, Francesco; Forestan, Cristian; Milner, Sara Giulia; Savojardo, Castrense; Tuberosa, Roberto; Salvi, Silvio, Cloning the barley nec3 disease lesion mimic mutant using complementation by sequencing, «THE PLANT GENOME», 2022, 15, Article number: e20187, pp. 1 - 15 [articolo]Open Access
Manfredi, Matteo; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita, E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants, «BIOINFORMATICS», 2022, 38, pp. 5168 - 5174 [articolo]Open Access
Casadio R.; Martelli P.L.; Savojardo C., Machine learning solutions for predicting protein–protein interactions, «WILEY INTERDISCIPLINARY REVIEWS. COMPUTATIONAL MOLECULAR SCIENCE», 2022, 12, pp. 1 - 21 [articolo]Open Access
Castrense Savojardo, Davide Baldazzi, Giulia Babbi, Pier Luigi Martelli, Rita Casadio, Mapping human disease-associated enzymes into Reactome allows characterization of disease groups and their interactions, «SCIENTIFIC REPORTS», 2022, 12, Article number: 17963, pp. 1 - 10 [articolo]Open Access
